Although straightforward at first glance, de novo transcriptome assembly and annotation can quickly prove to be challenging undertakings. Subsequently, the sequences must be annotated in order to identify sequence-intrinsic and evolutionary features in them (for example, protein-coding regions). In the absence of a sequenced genome to guide the reconstruction process, the transcriptome must be assembled de novo using only the information available in the RNA-seq reads. The more creative you get with annotation, the more engaged your students will be.A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily attainable proxy catalog of protein-coding genes when genome assembly is unnecessary, expensive or difficult. If you don’t have a digital reading platform, you can also teach how to annotate a basic PDF text using simple annotation tools like highlights or comments. These include highlighters, text comments, sticky notes, mark up tools for underlining, circling, or drawing boxes, and many more. Most digital reading platforms include a number of tools that make annotation easy. Teach Your Students How to Annotate a PDF ![]() They can also write an opinion on a particular section, so there’s no right or wrong answer. Ask them to circle a word they don’t know, look up that word in the dictionary, and write the definition in a comment. Keep It SimpleĮspecially for younger or struggling readers, help your students develop self-confidence by keeping things simple. You can modify your rubric as goals and students’ needs change over time. This provides guidance for your students and makes grading easier for you. When you know what your annotation goals are for your students, it can be useful to develop a simple rubric that defines what high-quality and thoughtful annotation looks like. You might have them explain how headings and subheads connect with the text, or have them identify facts that add to their understanding. When first teaching students about annotation, you can help shape their critical analysis and active reading strategies by giving them specific things to look for while reading, like a checklist or annotation worksheet for a text. This type of modeling and interaction helps students understand the thought process that critical reading requires.ģ. ![]() Show students how you might underline key words or sentences and write comments or questions, and explain what you’re thinking as you go through the reading and annotation process.Īnnotation Activity: Project a short, simple text and let students come up and write their own comments and discuss what they’ve written and why. Display a sample text and think out loud as you make notes. ![]() One of the most effective ways to teach annotation is to show students your own thought process when annotating a text. writing a short summary of a key sectionĪssure them that good annotating will help them concentrate and better understand what they read and better remember their thoughts and ideas when they revisit the text.posing a question when something isn’t fully understood.highlighting a phrase or sentence and including a comment.Start with some basic forms of annotation: Help your students understand that annotation is simply the process of thoughtful reading and making notes as they study a text. Annotation provides that immersive experience, and new digital reading technologies not only make annotation easier than ever, but also make it possible for any book, article, or text to be annotated.īelow are seven strategies to help your students master the basics of annotation and become more engaged, closer readers. In order to think critically about a text, students need to learn how to actively engage with the text they’re reading. ![]() However, it’s also one of the more difficult skills to teach. Annotation more fully engages students and increases reading comprehension strategies, helping students develop a deeper understanding and appreciation for literature. For many educators, annotation goes hand in hand with developing close reading skills.
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